Publication

2025

Original Article

• "Mitochondrial gene editing and allotopic expression unveil the role of orf125 in the induction of male fertility in some Solanum spp. hybrids and in the evolution of the common potato. "
  Rachele Tamburino, Nunzio D'Agostino, Gaetano Aufiero, Alessandro Nicolia, Angelo Facchiano, Deborah Giordano, Lorenza Sannino, Rosa Paparo, Shin-Ichi Arimura, Nunzia Scotti, Teodoro Cardi
  Plant Biotechnology Journal (2025).

  • URL
  • DOI: 10.1111/pbi.70012
• "Mitochondrial DNA and the largest nuclear-mitochondrial DNA in Arabidopsis can be separated by their methylation levels"
  Yuyang Zhong, Miki Okuno, Nobuhiro Tsutsumi, Shin-Ichi Arimura
  Plant Physiology Feb 20:kiaf069. doi: 10.1093/plphys/kiaf069. Online ahead of print., https://academic.oup.com/plphys/advance-article/doi/10.1093/plphys/kiaf069/8026086 (2025).

  • DOI: 10.1093/plphys/kiaf069/8026086

Review & Misc

• "Recent trends and advances in chloroplast engineering and transformation methods. "
  Muralikrishna Narra, Issei Nakazato Brittany Polley, Shin-ichi Arimura, Grant N. Woronuk, Pankaj K. Bhowmik
  Front. Plant Sci., Volume 16 - 2025 | https://doi.org/10.3389/fpls.2025.1526578 16 (2025).

  • DOI: 10.3389/fpls.2025.1526578

Presentation in International Conferences

• "Uncovering the Role of Chloroplast Nucleoids in Pyrenoid Assembly"
  Haruki Kanazawa, Mari Takusagawa, Daisuke Shimamura, Yoshimi Kinoshita, Tomoko Nishiyama, Ryutaro Tokutsu, Masayuki Onishi, Toshiharu Shikanai, Takashi Yamano, Yoshiki Nishimura,
  21st International Conference on the Cell and Molecular Biology of Chlamydomonas, (2025).
• "Molecular Mechanisms Coordinating Chloroplast Nucleoids and Pyrenoid Formation”, The 11th International Symposium on Inorganic Carbon Utilization by Aquatic Photosynthetic Organisms (CCM11),"
  Haruki Kanazawa, Mari Takusagawa, Daisuke Shimamura, Yoshimi Kinoshita, Tomoko Nishiyama, Ryutaro Tokutsu, Masayuki Onishi, Toshiharu Shikanai, Takashi Yamano, Yoshiki Nishimura,
  (2025).
• "Moderate overexpression of PROTON GRADIENT REGULATION 5 enhances photosynthesis and growth under fluctuating light in Arabidopsis thaliana"
  谷川慶一郎（発表者）、桶川友季、鹿内利治、矢守航
  (2025).

2024

Original Article

• "The mitochondrial orf117Sha gene desynchronizes pollen development and causes pollen abortion in the Arabidopsis Sha CMS"
  Dehaene Noémie, Boussardon Clément, Andrey Philippe, Charif Delphine, Brandt Dennis, Gilouppe Taillefer Clémence, Nietzel Thomas, Ricou Anthony, Simon Matthieu, Tran Joseph, Vezon Daniel, Camilleri Christine, Arimura Shin-ichi, Schwarzländer Markus, Budar Françoise
  Journal of Experimental Botany (2024).

  • DOI: 10.1093/jxb/erae214
• "Mitochondrial genome editing of WA352 via mitoTALENs restore fertility in cytoplasmic male sterile rice"
  Jiawei Zhou, Liyun Nie, Shuo Zhang, Hailiang Mao, Shin-ichi Arimura, Shuangxia Jin, Zhiqiang Wu
  Plant Biotechnology Journal (2024).

  • URL
  • DOI: https://doi.org/10.1111/pbi.14315
• "Editing of ORF138 restores fertility of Ogura cytoplasmic male sterile broccoli via mitoTALENs"
  Fengyuan Xu, Tongbing Su, Xiaochen Zhang, Lei Qiu, Xiaodong Yang, Nobuya Koizuka, Shin-ichi Arimura, Zhongyuan Hu, Mingfang Zhang, Jinghua Yang
  Plant Biotechnology Journal (2024).

  • DOI: 10.1093/plphys/kiad678
• "Mitochondrial DNA editing in potato through mitoTALEN and mitoTALECD: molecular characterization and stability of editing events"
  Alessandro Nicolia, Nunzia Scotti, Nunzio D’Agostino, Giovanna Festa, Lorenza Sannino, Gaetano Aufiero, Shin-ichi Arimura & Teodoro Cardi
  Plant Methods (2024).

  • DOI: 10.1186/s13007-023-01124-9

Review & Misc

• "Multilayered Regulation of Plastids and Mitochondria "
  Shin-Ichi Arimura, Iris Finkemeier, Kristina Kühn, Mizuki Takenaka
  (2024).

  • DOI: 10.1093/pcp/pcae036
• "Special Issue "Breeding by modification of chloroplast and mitochondrial genomes" is out on Agri-Bio, Nov"
  (2024).

2023

Original Article

• "Targeted A-to-G base editing in the organellar genomes of Arabidopsis with monomeric programmable deaminases"
  Chang Zhou, Miki Okuno, Issei Nakazato, Nobuhiro Tsutsumi, Shin-ichi Arimura
  Plant Physiology (2023).

  • URL
  • DOI: 10.1093/plphys/kiad678

Review & Misc

• "Genome editing of plant mitochondrial and chloroplast genomes "
  Shin-ichi Arimura, Issei Nakazato
  Plant and Cell Physiology (2023).

  • URL
  • DOI: 10.1093/pcp/pcad162